Longest Common Subsequence

on April 23, 2020 · 4 mins read

Introduction to the Longest Common Subsequence Algorithm

Have you ever been in a situation where you had to find the longest common subsequence between two strings of characters? If so, then you know how difficult it can be to find the right algorithm to solve the problem.

The Longest Common Subsequence (LCS) algorithm is one of the most important algorithms used in computer science. It is used to find the longest common subsequence between two strings of characters. The algorithm is used in many areas, such as bioinformatics, natural language processing, and text processing.

In this blog post, we will discuss the basics of the LCS algorithm, its applications, and how to implement it in code. We will also discuss some of the common pitfalls and best practices when using the algorithm.

What is a Longest Common Subsequence?

A longest common subsequence (LCS) is a sequence of characters that appears in both of two strings of characters. The LCS algorithm is used to find the longest common subsequence between two strings.

For example, consider the following two strings:

String 1: ABCDEFGHIJKLMNOPQRSTUVWXYZ

String 2: ABCDEGHIJKLMNOPQRSUVWXYZ

The longest common subsequence between these two strings is ABCDEHIJKLMNOPQRSUVWXYZ.

How Does the Longest Common Subsequence Algorithm Work?

The LCS algorithm works by comparing each character of one string to each character of the other string. If a character is found to be the same in both strings, then that character is added to the LCS. If the characters are not the same, then the algorithm moves on to the next character in each string.

The algorithm continues until it has compared all of the characters in both strings. The resulting LCS is the longest common subsequence between the two strings.

Pseudocode for the Longest Common Subsequence Algorithm

The pseudocode for the LCS algorithm is as follows:

function LCS(string1, string2):
  // Initialize the LCS matrix
  let lcsMatrix = new Array(string1.length + 1)
  for (let i = 0; i <= string1.length; i++) {
    lcsMatrix[i] = new Array(string2.length + 1)
  }

  // Fill the first row and column with 0s
  for (let i = 0; i <= string1.length; i++) {
    lcsMatrix[i][0] = 0
  }
  for (let j = 0; j <= string2.length; j++) {
    lcsMatrix[0][j] = 0
  }

  // Fill the rest of the matrix
  for (let i = 1; i <= string1.length; i++) {
    for (let j = 1; j <= string2.length; j++) {
      if (string1[i-1] === string2[j-1]) {
        lcsMatrix[i][j] = lcsMatrix[i-1][j-1] + 1
      } else {
        lcsMatrix[i][j] = Math.max(lcsMatrix[i-1][j], lcsMatrix[i][j-1])
      }
    }
  }

  // Return the LCS
  let lcs = ""
  let i = string1.length
  let j = string2.length
  while (i > 0 && j > 0) {
    if (string1[i-1] === string2[j-1]) {
      lcs = string1[i-1] + lcs
      i--
      j--
    } else if (lcsMatrix[i-1][j] > lcsMatrix[i][j-1]) {
      i--
    } else {
      j--
    }
  }

  return lcs

Applications of the Longest Common Subsequence Algorithm

The LCS algorithm has many applications in computer science. It is used in bioinformatics to compare DNA sequences, in natural language processing to find similarities between sentences, and in text processing to compare documents.

The algorithm is also used in version control systems to compare files and detect changes. In addition, the algorithm is used in plagiarism detection systems to compare documents and detect copied text.

Conclusion

The Longest Common Subsequence (LCS) algorithm is an important algorithm used in computer science. It is used to find the longest common subsequence between two strings of characters. The algorithm has many applications, including bioinformatics, natural language processing, text processing, version control systems, and plagiarism detection systems.

The pseudocode for the algorithm is provided above. If you are interested in learning more about the algorithm, you can find more information in the references below.

References

  • Cormen, Thomas H., Charles E. Leiserson, Ronald L. Rivest, and Clifford Stein. Introduction to Algorithms. MIT Press, 2009.
  • Longest Common Subsequence. (2020). Retrieved from https://en.wikipedia.org/wiki/Longest_common_subsequence_problem
  • Longest Common Subsequence. (2020). Retrieved from https://www.geeksforgeeks.org/longest-common-subsequence-dp-4/